Welcome to genomeNLP’s documentation!#
Contents:
- genomeNLP: Genome recoding for Machine Learning Usage incorporating genomicBERT
- Create a token set from sequences
- Create a dataset object from sequences
- Create embeddings from a tokenised dataset
- Perform a hyperparameter sweep
- genomicBERT: Train a deep learning classifier
- Perform cross-validation
- Compare performance of different deep learning models
- Generate synthetic sequences for use in classification
- Get class attribution for deep learning models