genomeNLP: Case study of deep learning

Copyright (c) 2023 Tyrone Chen ORCID logo, Navya Tyagi ORCID logo, and Sonika Tyagi ORCID logo.

Code in this repository is provided under a MIT license. Documentation for this specific case study is provided with © all rights reserved (temporary until publication). All other documentation not on this page is provided under a CC-BY-3.0 AU license.

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Introduction

genomeNLP: Case study of deep learning

DNA case study

genomeNLP: Case study of DNA

RNA case study

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Protein case study

genomeNLP: Case study of Protein

Citation

Cite our manuscript here:

@article{chen2023genomicbert,
    title={genomicBERT and data-free deep-learning model evaluation},
    author={Chen, Tyrone and Tyagi, Navya and Chauhan, Sarthak and Peleg, Anton Y and Tyagi, Sonika},
    journal={bioRxiv},
    month={jun},
    pages={2023--05},
    year={2023},
    publisher={Cold Spring Harbor Laboratory},
    doi={10.1101/2023.05.31.542682},
    url={https://doi.org/10.1101/2023.05.31.542682}
}

Cite our software here:

@software{tyrone_chen_2023_8135591,
  author       = {Tyrone Chen and
                  Navya Tyagi and
                  Sarthak Chauhan and
                  Anton Y. Peleg and
                  Sonika Tyagi},
  title        = {{genomicBERT and data-free deep-learning model
                  evaluation}},
  month        = jul,
  year         = 2023,
  publisher    = {Zenodo},
  version      = {latest},
  doi          = {10.5281/zenodo.8135590},
  url          = {https://doi.org/10.5281/zenodo.8135590}
}